NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
6,925.6 |
| Mean read quality |
9.9 |
| Median read length |
6,115.0 |
| Median read quality |
10.9 |
| Number of reads |
786,207.0 |
| Read length N50 |
7,928.0 |
| STDEV read length |
3,809.6 |
| Total bases |
5,444,948,075.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
786207 (100.0%) 5444.9Mb |
| >Q7 |
786207 (100.0%) 5444.9Mb |
| >Q10 |
541679 (68.9%) 3715.9Mb |
| >Q12 |
169206 (21.5%) 1139.4Mb |
| >Q15 |
50 (0.0%) 0.3Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
16.1 (2096) |
| 2 |
15.7 (4427) |
| 3 |
15.7 (2489) |
| 4 |
15.6 (6274) |
| 5 |
15.6 (12903) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
78097 (8.1) |
| 2 |
61272 (8.3) |
| 3 |
59880 (8.9) |
| 4 |
58840 (9.7) |
| 5 |
57182 (10.4) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot