NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
6,421.5 |
| Mean read quality |
11.5 |
| Median read length |
5,798.0 |
| Median read quality |
12.8 |
| Number of reads |
657,817.0 |
| Read length N50 |
7,957.0 |
| STDEV read length |
3,545.6 |
| Total bases |
4,224,181,728.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
657817 (100.0%) 4224.2Mb |
| >Q7 |
657817 (100.0%) 4224.2Mb |
| >Q10 |
567305 (86.2%) 3639.6Mb |
| >Q12 |
418947 (63.7%) 2684.0Mb |
| >Q15 |
78167 (11.9%) 458.6Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
20.4 (2044) |
| 2 |
20.4 (3240) |
| 3 |
20.2 (2109) |
| 4 |
20.2 (2228) |
| 5 |
20.1 (4780) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
64917 (8.0) |
| 2 |
52497 (8.3) |
| 3 |
48870 (13.1) |
| 4 |
47394 (13.5) |
| 5 |
44633 (8.7) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot