NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
11,528.4 |
| Mean read quality |
9.8 |
| Median read length |
11,296.0 |
| Median read quality |
10.7 |
| Number of reads |
363,557.0 |
| Read length N50 |
13,207.0 |
| STDEV read length |
5,172.6 |
| Total bases |
4,191,229,015.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
363557 (100.0%) 4191.2Mb |
| >Q7 |
363556 (100.0%) 4191.2Mb |
| >Q10 |
233186 (64.1%) 2679.1Mb |
| >Q12 |
82832 (22.8%) 942.7Mb |
| >Q15 |
115 (0.0%) 1.1Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
16.2 (5672) |
| 2 |
16.1 (3572) |
| 3 |
15.8 (13675) |
| 4 |
15.8 (11399) |
| 5 |
15.7 (12375) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
56875 (10.1) |
| 2 |
55802 (9.1) |
| 3 |
54605 (7.4) |
| 4 |
54433 (9.7) |
| 5 |
54088 (10.0) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot