NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
8,209.3 |
| Mean read quality |
9.6 |
| Median read length |
8,368.0 |
| Median read quality |
10.5 |
| Number of reads |
459,338.0 |
| Read length N50 |
9,122.0 |
| STDEV read length |
3,155.4 |
| Total bases |
3,770,851,942.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
459338 (100.0%) 3770.9Mb |
| >Q7 |
459338 (100.0%) 3770.9Mb |
| >Q10 |
280222 (61.0%) 2287.4Mb |
| >Q12 |
60760 (13.2%) 479.1Mb |
| >Q15 |
27 (0.0%) 0.2Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
15.9 (3386) |
| 2 |
15.7 (10612) |
| 3 |
15.7 (6629) |
| 4 |
15.6 (4467) |
| 5 |
15.6 (2207) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
55054 (8.5) |
| 2 |
52479 (10.7) |
| 3 |
47643 (9.3) |
| 4 |
44206 (10.0) |
| 5 |
42373 (12.0) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot