NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
5,959.5 |
| Mean read quality |
9.6 |
| Median read length |
5,821.0 |
| Median read quality |
10.4 |
| Number of reads |
804,321.0 |
| Read length N50 |
6,888.0 |
| STDEV read length |
2,716.3 |
| Total bases |
4,793,368,627.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
804321 (100.0%) 4793.4Mb |
| >Q7 |
804320 (100.0%) 4793.4Mb |
| >Q10 |
484366 (60.2%) 2866.3Mb |
| >Q12 |
111052 (13.8%) 640.6Mb |
| >Q15 |
38 (0.0%) 0.2Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
15.7 (2149) |
| 2 |
15.7 (4099) |
| 3 |
15.6 (2469) |
| 4 |
15.6 (5069) |
| 5 |
15.6 (3046) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
50076 (8.3) |
| 2 |
48514 (10.5) |
| 3 |
45725 (11.7) |
| 4 |
39618 (8.3) |
| 5 |
39565 (10.0) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot