NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
8,543.0 |
| Mean read quality |
9.5 |
| Median read length |
8,797.0 |
| Median read quality |
10.5 |
| Number of reads |
591,439.0 |
| Read length N50 |
9,885.0 |
| STDEV read length |
3,592.5 |
| Total bases |
5,052,664,926.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
591272 (100.0%) 5051.4Mb |
| >Q7 |
571255 (96.6%) 4883.1Mb |
| >Q10 |
364541 (61.6%) 3112.7Mb |
| >Q12 |
98879 (16.7%) 828.9Mb |
| >Q15 |
80 (0.0%) 0.5Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
16.4 (3663) |
| 2 |
16.0 (2822) |
| 3 |
15.9 (4863) |
| 4 |
15.9 (8319) |
| 5 |
15.7 (4736) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
123968 (9.0) |
| 2 |
101075 (9.9) |
| 3 |
90575 (10.3) |
| 4 |
58258 (8.0) |
| 5 |
53723 (7.8) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot