NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
5,629.4 |
| Mean read quality |
9.6 |
| Median read length |
4,968.0 |
| Median read quality |
10.4 |
| Number of reads |
956,739.0 |
| Read length N50 |
6,935.0 |
| STDEV read length |
3,043.3 |
| Total bases |
5,385,887,128.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
956739 (100.0%) 5385.9Mb |
| >Q7 |
956735 (100.0%) 5385.9Mb |
| >Q10 |
565818 (59.1%) 3167.6Mb |
| >Q12 |
140395 (14.7%) 765.5Mb |
| >Q15 |
105 (0.0%) 0.5Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
16.3 (5503) |
| 2 |
16.2 (7872) |
| 3 |
15.9 (2167) |
| 4 |
15.9 (3474) |
| 5 |
15.9 (2383) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
71962 (8.2) |
| 2 |
66146 (10.5) |
| 3 |
65939 (8.0) |
| 4 |
58050 (10.8) |
| 5 |
55830 (10.9) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot