NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
6,320.2 |
| Mean read quality |
11.5 |
| Median read length |
5,211.0 |
| Median read quality |
13.0 |
| Number of reads |
889,805.0 |
| Read length N50 |
8,014.0 |
| STDEV read length |
4,053.0 |
| Total bases |
5,623,755,965.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
889805 (100.0%) 5623.8Mb |
| >Q7 |
889805 (100.0%) 5623.8Mb |
| >Q10 |
738847 (83.0%) 4696.5Mb |
| >Q12 |
563746 (63.4%) 3603.2Mb |
| >Q15 |
160464 (18.0%) 990.6Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
20.9 (2299) |
| 2 |
20.8 (4188) |
| 3 |
20.8 (3183) |
| 4 |
20.6 (5662) |
| 5 |
20.6 (12369) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
65337 (12.4) |
| 2 |
62547 (8.3) |
| 3 |
61271 (12.3) |
| 4 |
59845 (8.1) |
| 5 |
56849 (8.9) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot