NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
9,403.7 |
| Mean read quality |
10.0 |
| Median read length |
9,251.0 |
| Median read quality |
10.9 |
| Number of reads |
516,929.0 |
| Read length N50 |
10,362.0 |
| STDEV read length |
4,021.7 |
| Total bases |
4,861,038,892.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
516929 (100.0%) 4861.0Mb |
| >Q7 |
516928 (100.0%) 4861.0Mb |
| >Q10 |
364613 (70.5%) 3426.0Mb |
| >Q12 |
108651 (21.0%) 1007.1Mb |
| >Q15 |
52 (0.0%) 0.4Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
16.9 (10475) |
| 2 |
16.0 (3141) |
| 3 |
15.8 (2835) |
| 4 |
15.7 (4433) |
| 5 |
15.6 (4168) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
66618 (8.8) |
| 2 |
61223 (7.5) |
| 3 |
57200 (8.6) |
| 4 |
55287 (9.1) |
| 5 |
52826 (12.2) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot