NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
6,130.2 |
| Mean read quality |
11.4 |
| Median read length |
5,074.0 |
| Median read quality |
12.7 |
| Number of reads |
556,255.0 |
| Read length N50 |
7,811.0 |
| STDEV read length |
3,808.1 |
| Total bases |
3,409,933,818.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
556255 (100.0%) 3409.9Mb |
| >Q7 |
556255 (100.0%) 3409.9Mb |
| >Q10 |
464136 (83.4%) 2843.3Mb |
| >Q12 |
334751 (60.2%) 2046.4Mb |
| >Q15 |
81627 (14.7%) 471.5Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
21.5 (2143) |
| 2 |
21.0 (2518) |
| 3 |
20.9 (2320) |
| 4 |
20.7 (2723) |
| 5 |
20.6 (2513) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
70061 (7.8) |
| 2 |
50084 (8.9) |
| 3 |
47747 (8.8) |
| 4 |
45658 (13.2) |
| 5 |
43830 (13.6) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot