NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
8,449.6 |
| Mean read quality |
9.5 |
| Median read length |
8,428.0 |
| Median read quality |
10.6 |
| Number of reads |
651,682.0 |
| Read length N50 |
10,674.0 |
| STDEV read length |
4,269.9 |
| Total bases |
5,506,453,683.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
651526 (100.0%) 5505.2Mb |
| >Q7 |
630036 (96.7%) 5326.9Mb |
| >Q10 |
406496 (62.4%) 3436.7Mb |
| >Q12 |
111846 (17.2%) 930.2Mb |
| >Q15 |
172 (0.0%) 1.2Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
17.1 (7986) |
| 2 |
16.6 (2407) |
| 3 |
16.6 (2260) |
| 4 |
16.3 (3669) |
| 5 |
16.3 (13782) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
154277 (10.0) |
| 2 |
138819 (10.4) |
| 3 |
84009 (10.2) |
| 4 |
82601 (10.8) |
| 5 |
70944 (10.5) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot