NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
8,493.6 |
| Mean read quality |
10.0 |
| Median read length |
8,522.0 |
| Median read quality |
10.9 |
| Number of reads |
567,058.0 |
| Read length N50 |
9,575.0 |
| STDEV read length |
3,758.1 |
| Total bases |
4,816,383,874.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
567058 (100.0%) 4816.4Mb |
| >Q7 |
567056 (100.0%) 4816.4Mb |
| >Q10 |
396822 (70.0%) 3365.3Mb |
| >Q12 |
120947 (21.3%) 1012.2Mb |
| >Q15 |
77 (0.0%) 0.5Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
16.1 (9418) |
| 2 |
16.0 (3785) |
| 3 |
15.8 (8696) |
| 4 |
15.7 (8528) |
| 5 |
15.7 (2199) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
79965 (7.6) |
| 2 |
55161 (7.7) |
| 3 |
52758 (7.2) |
| 4 |
50723 (8.7) |
| 5 |
48078 (9.3) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot