NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
6,494.9 |
| Mean read quality |
11.5 |
| Median read length |
5,774.0 |
| Median read quality |
12.8 |
| Number of reads |
965,459.0 |
| Read length N50 |
7,888.0 |
| STDEV read length |
3,655.6 |
| Total bases |
6,270,567,124.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
965459 (100.0%) 6270.6Mb |
| >Q7 |
965457 (100.0%) 6270.6Mb |
| >Q10 |
827045 (85.7%) 5366.2Mb |
| >Q12 |
608377 (63.0%) 3954.8Mb |
| >Q15 |
111658 (11.6%) 687.3Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
20.4 (2788) |
| 2 |
20.0 (2285) |
| 3 |
20.0 (2918) |
| 4 |
20.0 (4035) |
| 5 |
19.9 (2298) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
440013 (7.7) |
| 2 |
58120 (12.1) |
| 3 |
53271 (14.7) |
| 4 |
53053 (8.0) |
| 5 |
52974 (8.0) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot