NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
6,962.2 |
| Mean read quality |
9.5 |
| Median read length |
6,979.0 |
| Median read quality |
10.4 |
| Number of reads |
477,524.0 |
| Read length N50 |
8,554.0 |
| STDEV read length |
3,379.7 |
| Total bases |
3,324,614,188.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
477524 (100.0%) 3324.6Mb |
| >Q7 |
477524 (100.0%) 3324.6Mb |
| >Q10 |
280263 (58.7%) 1942.5Mb |
| >Q12 |
65241 (13.7%) 442.8Mb |
| >Q15 |
12 (0.0%) 0.1Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
15.7 (2021) |
| 2 |
15.6 (10615) |
| 3 |
15.5 (3378) |
| 4 |
15.4 (8574) |
| 5 |
15.3 (7035) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
66739 (8.3) |
| 2 |
55664 (10.7) |
| 3 |
49713 (7.4) |
| 4 |
47661 (10.2) |
| 5 |
47110 (13.1) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot