NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
8,748.0 |
| Mean read quality |
9.8 |
| Median read length |
8,538.0 |
| Median read quality |
10.7 |
| Number of reads |
434,485.0 |
| Read length N50 |
10,502.0 |
| STDEV read length |
4,257.7 |
| Total bases |
3,800,863,053.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
434485 (100.0%) 3800.9Mb |
| >Q7 |
434485 (100.0%) 3800.9Mb |
| >Q10 |
278935 (64.2%) 2426.5Mb |
| >Q12 |
100859 (23.2%) 868.9Mb |
| >Q15 |
166 (0.0%) 1.1Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
16.4 (9196) |
| 2 |
16.4 (4759) |
| 3 |
16.3 (2460) |
| 4 |
16.2 (15552) |
| 5 |
16.1 (8421) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
56914 (11.0) |
| 2 |
56636 (14.9) |
| 3 |
56146 (8.8) |
| 4 |
55398 (8.6) |
| 5 |
54094 (8.6) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot