NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
7,863.4 |
| Mean read quality |
9.6 |
| Median read length |
7,599.0 |
| Median read quality |
10.4 |
| Number of reads |
429,284.0 |
| Read length N50 |
8,935.0 |
| STDEV read length |
3,499.6 |
| Total bases |
3,375,638,548.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
429284 (100.0%) 3375.6Mb |
| >Q7 |
429284 (100.0%) 3375.6Mb |
| >Q10 |
256013 (59.6%) 2003.9Mb |
| >Q12 |
57843 (13.5%) 443.7Mb |
| >Q15 |
20 (0.0%) 0.1Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
16.6 (12556) |
| 2 |
16.5 (2191) |
| 3 |
15.5 (3643) |
| 4 |
15.5 (8326) |
| 5 |
15.3 (4491) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
50580 (8.4) |
| 2 |
44650 (10.7) |
| 3 |
43252 (8.6) |
| 4 |
42990 (8.6) |
| 5 |
42614 (12.2) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot