NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
5,004.1 |
| Mean read quality |
10.9 |
| Median read length |
4,151.0 |
| Median read quality |
12.2 |
| Number of reads |
698,648.0 |
| Read length N50 |
6,006.0 |
| STDEV read length |
2,836.6 |
| Total bases |
3,496,116,637.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
698648 (100.0%) 3496.1Mb |
| >Q7 |
698648 (100.0%) 3496.1Mb |
| >Q10 |
534751 (76.5%) 2638.1Mb |
| >Q12 |
365331 (52.3%) 1792.5Mb |
| >Q15 |
101828 (14.6%) 480.2Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
21.1 (2597) |
| 2 |
20.9 (2888) |
| 3 |
20.6 (2342) |
| 4 |
20.5 (2940) |
| 5 |
20.5 (3181) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
46417 (8.8) |
| 2 |
43281 (8.2) |
| 3 |
40333 (8.4) |
| 4 |
38415 (7.9) |
| 5 |
37136 (9.1) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot