NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
7,678.9 |
| Mean read quality |
9.5 |
| Median read length |
7,888.0 |
| Median read quality |
10.3 |
| Number of reads |
527,461.0 |
| Read length N50 |
8,891.0 |
| STDEV read length |
3,369.4 |
| Total bases |
4,050,340,423.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
527461 (100.0%) 4050.3Mb |
| >Q7 |
527459 (100.0%) 4050.3Mb |
| >Q10 |
303173 (57.5%) 2319.4Mb |
| >Q12 |
63391 (12.0%) 471.8Mb |
| >Q15 |
20 (0.0%) 0.2Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
15.6 (9453) |
| 2 |
15.5 (3353) |
| 3 |
15.5 (10429) |
| 4 |
15.4 (13325) |
| 5 |
15.4 (9350) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
50305 (10.4) |
| 2 |
43887 (8.4) |
| 3 |
41809 (11.5) |
| 4 |
40958 (9.3) |
| 5 |
38698 (12.2) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot