NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
9,196.2 |
| Mean read quality |
10.0 |
| Median read length |
9,251.0 |
| Median read quality |
10.9 |
| Number of reads |
421,743.0 |
| Read length N50 |
10,485.0 |
| STDEV read length |
4,123.3 |
| Total bases |
3,878,417,207.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
421743 (100.0%) 3878.4Mb |
| >Q7 |
421743 (100.0%) 3878.4Mb |
| >Q10 |
294477 (69.8%) 2697.5Mb |
| >Q12 |
95196 (22.6%) 864.6Mb |
| >Q15 |
64 (0.0%) 0.4Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
16.4 (2040) |
| 2 |
16.2 (6356) |
| 3 |
15.9 (3044) |
| 4 |
15.8 (4123) |
| 5 |
15.6 (5423) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
55853 (11.2) |
| 2 |
52076 (10.4) |
| 3 |
48521 (12.3) |
| 4 |
48177 (7.7) |
| 5 |
44928 (10.7) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot