NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
8,626.2 |
| Mean read quality |
10.0 |
| Median read length |
8,579.0 |
| Median read quality |
11.0 |
| Number of reads |
511,920.0 |
| Read length N50 |
9,768.0 |
| STDEV read length |
3,815.1 |
| Total bases |
4,415,924,545.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
511920 (100.0%) 4415.9Mb |
| >Q7 |
511920 (100.0%) 4415.9Mb |
| >Q10 |
366240 (71.5%) 3148.0Mb |
| >Q12 |
119593 (23.4%) 1014.0Mb |
| >Q15 |
45 (0.0%) 0.3Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
15.9 (5108) |
| 2 |
15.9 (2026) |
| 3 |
15.8 (2757) |
| 4 |
15.8 (2266) |
| 5 |
15.7 (7057) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
58666 (8.5) |
| 2 |
52449 (8.2) |
| 3 |
50700 (8.8) |
| 4 |
47662 (8.8) |
| 5 |
47236 (9.0) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot