NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
5,890.4 |
| Mean read quality |
9.3 |
| Median read length |
4,471.0 |
| Median read quality |
10.1 |
| Number of reads |
793,740.0 |
| Read length N50 |
7,791.0 |
| STDEV read length |
4,039.3 |
| Total bases |
4,675,427,666.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
793740 (100.0%) 4675.4Mb |
| >Q7 |
793737 (100.0%) 4675.4Mb |
| >Q10 |
411497 (51.8%) 2414.9Mb |
| >Q12 |
87252 (11.0%) 484.4Mb |
| >Q15 |
24 (0.0%) 0.1Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
16.0 (2000) |
| 2 |
15.6 (2427) |
| 3 |
15.6 (2366) |
| 4 |
15.5 (3830) |
| 5 |
15.4 (4716) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
63952 (8.8) |
| 2 |
60443 (9.1) |
| 3 |
59840 (8.7) |
| 4 |
57693 (8.6) |
| 5 |
57640 (7.8) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot