NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
9,020.8 |
| Mean read quality |
9.5 |
| Median read length |
9,340.0 |
| Median read quality |
10.4 |
| Number of reads |
481,764.0 |
| Read length N50 |
10,240.0 |
| STDEV read length |
3,687.1 |
| Total bases |
4,345,888,589.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
481764 (100.0%) 4345.9Mb |
| >Q7 |
481763 (100.0%) 4345.9Mb |
| >Q10 |
282649 (58.7%) 2544.8Mb |
| >Q12 |
63988 (13.3%) 563.8Mb |
| >Q15 |
45 (0.0%) 0.4Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
16.0 (2094) |
| 2 |
15.9 (8347) |
| 3 |
15.9 (10990) |
| 4 |
15.8 (9069) |
| 5 |
15.7 (2737) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
50656 (9.3) |
| 2 |
49651 (12.1) |
| 3 |
46603 (9.3) |
| 4 |
45907 (11.1) |
| 5 |
44093 (9.0) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot