NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
6,768.8 |
| Mean read quality |
9.6 |
| Median read length |
5,971.0 |
| Median read quality |
10.4 |
| Number of reads |
674,495.0 |
| Read length N50 |
8,507.0 |
| STDEV read length |
3,996.1 |
| Total bases |
4,565,514,536.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
674495 (100.0%) 4565.5Mb |
| >Q7 |
674495 (100.0%) 4565.5Mb |
| >Q10 |
400257 (59.3%) 2693.7Mb |
| >Q12 |
108182 (16.0%) 711.7Mb |
| >Q15 |
104 (0.0%) 0.6Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
16.4 (2320) |
| 2 |
16.2 (2004) |
| 3 |
16.1 (2119) |
| 4 |
16.1 (2065) |
| 5 |
16.0 (18352) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
59679 (7.8) |
| 2 |
57411 (12.1) |
| 3 |
57256 (7.6) |
| 4 |
56481 (11.2) |
| 5 |
56393 (11.5) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot