NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
7,187.2 |
| Mean read quality |
9.7 |
| Median read length |
6,915.0 |
| Median read quality |
10.6 |
| Number of reads |
637,241.0 |
| Read length N50 |
8,295.0 |
| STDEV read length |
3,661.6 |
| Total bases |
4,579,990,531.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
637241 (100.0%) 4580.0Mb |
| >Q7 |
637241 (100.0%) 4580.0Mb |
| >Q10 |
409794 (64.3%) 2903.9Mb |
| >Q12 |
111783 (17.5%) 773.7Mb |
| >Q15 |
101 (0.0%) 0.5Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
16.3 (3065) |
| 2 |
16.3 (2752) |
| 3 |
16.2 (2561) |
| 4 |
16.2 (6554) |
| 5 |
15.7 (3303) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
56039 (8.2) |
| 2 |
53463 (10.4) |
| 3 |
52502 (7.6) |
| 4 |
51512 (9.3) |
| 5 |
51281 (9.3) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot