NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
8,285.3 |
| Mean read quality |
9.6 |
| Median read length |
7,730.0 |
| Median read quality |
10.5 |
| Number of reads |
691,359.0 |
| Read length N50 |
9,108.0 |
| STDEV read length |
3,749.5 |
| Total bases |
5,728,131,902.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
691359 (100.0%) 5728.1Mb |
| >Q7 |
691358 (100.0%) 5728.1Mb |
| >Q10 |
419817 (60.7%) 3465.9Mb |
| >Q12 |
118077 (17.1%) 968.5Mb |
| >Q15 |
53 (0.0%) 0.4Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
16.0 (7753) |
| 2 |
15.7 (5967) |
| 3 |
15.6 (2265) |
| 4 |
15.5 (7651) |
| 5 |
15.5 (9906) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
65154 (7.8) |
| 2 |
57672 (12.6) |
| 3 |
57323 (8.0) |
| 4 |
53706 (10.9) |
| 5 |
52864 (7.5) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot