NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
7,717.2 |
| Mean read quality |
9.6 |
| Median read length |
7,573.0 |
| Median read quality |
10.4 |
| Number of reads |
924,216.0 |
| Read length N50 |
8,779.0 |
| STDEV read length |
3,574.7 |
| Total bases |
7,132,341,633.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
924216 (100.0%) 7132.3Mb |
| >Q7 |
924216 (100.0%) 7132.3Mb |
| >Q10 |
550725 (59.6%) 4243.6Mb |
| >Q12 |
139900 (15.1%) 1063.6Mb |
| >Q15 |
79 (0.0%) 0.5Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
16.2 (3690) |
| 2 |
15.9 (2199) |
| 3 |
15.9 (5709) |
| 4 |
15.8 (7710) |
| 5 |
15.8 (6741) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
56417 (8.4) |
| 2 |
55146 (8.5) |
| 3 |
53889 (8.0) |
| 4 |
49669 (7.2) |
| 5 |
49536 (8.4) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot