NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
5,050.3 |
| Mean read quality |
9.3 |
| Median read length |
3,727.0 |
| Median read quality |
10.1 |
| Number of reads |
614,739.0 |
| Read length N50 |
6,276.0 |
| STDEV read length |
3,506.7 |
| Total bases |
3,104,617,716.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
614739 (100.0%) 3104.6Mb |
| >Q7 |
614739 (100.0%) 3104.6Mb |
| >Q10 |
314210 (51.1%) 1577.7Mb |
| >Q12 |
65684 (10.7%) 311.8Mb |
| >Q15 |
40 (0.0%) 0.1Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
16.0 (2472) |
| 2 |
15.8 (2700) |
| 3 |
15.7 (3064) |
| 4 |
15.7 (2204) |
| 5 |
15.6 (3898) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
61772 (10.9) |
| 2 |
53064 (8.2) |
| 3 |
50334 (8.8) |
| 4 |
50124 (9.4) |
| 5 |
50118 (8.7) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot