NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
3,606.4 |
| Mean read quality |
12.0 |
| Median read length |
1,694.0 |
| Median read quality |
12.9 |
| Number of reads |
23,777.0 |
| Read length N50 |
7,660.0 |
| STDEV read length |
3,888.1 |
| Total bases |
85,750,175.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
23777 (100.0%) 85.8Mb |
| >Q7 |
23777 (100.0%) 85.8Mb |
| >Q10 |
22409 (94.2%) 81.9Mb |
| >Q12 |
16052 (67.5%) 62.8Mb |
| >Q15 |
2507 (10.5%) 9.7Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
20.6 (821) |
| 2 |
19.9 (351) |
| 3 |
19.5 (7316) |
| 4 |
19.3 (440) |
| 5 |
19.2 (2260) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
26657 (12.6) |
| 2 |
24315 (14.6) |
| 3 |
22888 (9.7) |
| 4 |
22784 (9.3) |
| 5 |
22779 (14.2) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot