NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
2,803.5 |
| Mean read quality |
11.8 |
| Median read length |
1,538.0 |
| Median read quality |
12.8 |
| Number of reads |
19,395.0 |
| Read length N50 |
5,361.0 |
| STDEV read length |
2,925.3 |
| Total bases |
54,374,848.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
19395 (100.0%) 54.4Mb |
| >Q7 |
19395 (100.0%) 54.4Mb |
| >Q10 |
17592 (90.7%) 50.8Mb |
| >Q12 |
12433 (64.1%) 39.0Mb |
| >Q15 |
2311 (11.9%) 7.5Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
19.9 (684) |
| 2 |
19.6 (1025) |
| 3 |
19.5 (573) |
| 4 |
19.3 (3459) |
| 5 |
19.3 (1154) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
41539 (14.4) |
| 2 |
23247 (12.6) |
| 3 |
22307 (12.8) |
| 4 |
21893 (9.6) |
| 5 |
21812 (14.5) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot