NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
1,870.0 |
| Mean read quality |
11.5 |
| Median read length |
537.0 |
| Median read quality |
12.2 |
| Number of reads |
1,021.0 |
| Read length N50 |
4,977.0 |
| STDEV read length |
2,446.9 |
| Total bases |
1,909,273.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
1021 (100.0%) 1.9Mb |
| >Q7 |
1021 (100.0%) 1.9Mb |
| >Q10 |
899 (88.1%) 1.8Mb |
| >Q12 |
558 (54.7%) 1.4Mb |
| >Q15 |
97 (9.5%) 0.3Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
19.0 (2149) |
| 2 |
18.7 (4578) |
| 3 |
18.0 (4302) |
| 4 |
18.0 (6280) |
| 5 |
17.9 (5523) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
13805 (11.1) |
| 2 |
13310 (15.2) |
| 3 |
11625 (12.5) |
| 4 |
11447 (16.2) |
| 5 |
11396 (12.8) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot