NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
3,318.0 |
| Mean read quality |
11.5 |
| Median read length |
1,974.0 |
| Median read quality |
12.4 |
| Number of reads |
61,796.0 |
| Read length N50 |
6,454.0 |
| STDEV read length |
3,466.1 |
| Total bases |
205,041,303.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
61796 (100.0%) 205.0Mb |
| >Q7 |
61796 (100.0%) 205.0Mb |
| >Q10 |
56234 (91.0%) 192.3Mb |
| >Q12 |
35814 (58.0%) 134.2Mb |
| >Q15 |
3478 (5.6%) 12.9Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
19.7 (2275) |
| 2 |
19.1 (692) |
| 3 |
19.1 (593) |
| 4 |
19.1 (312) |
| 5 |
19.1 (647) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
55349 (13.3) |
| 2 |
51895 (14.7) |
| 3 |
38762 (12.0) |
| 4 |
38212 (11.6) |
| 5 |
38002 (12.1) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot