NanoPlot statistics report
NanoPlot reports
Summary statistics prior to filtering
| General summary |
|
| Mean read length |
497.3 |
| Mean read quality |
10.1 |
| Median read length |
366.0 |
| Median read quality |
11.2 |
| Number of reads |
40,427.0 |
| Read length N50 |
676.0 |
| STDEV read length |
406.7 |
| Total bases |
20,103,107.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
40411 (100.0%) 20.1Mb |
| >Q7 |
40093 (99.2%) 20.1Mb |
| >Q10 |
25310 (62.6%) 13.7Mb |
| >Q12 |
17190 (42.5%) 9.6Mb |
| >Q15 |
6598 (16.3%) 3.4Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
32.9 (10) |
| 2 |
32.4 (19) |
| 3 |
32.2 (20) |
| 4 |
32.1 (20) |
| 5 |
31.9 (20) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
3270 (13.5) |
| 2 |
3262 (10.0) |
| 3 |
3124 (12.0) |
| 4 |
2980 (14.1) |
| 5 |
2976 (13.2) |
Summary statistics after filtering
| General summary |
|
| Mean read length |
497.3 |
| Mean read quality |
10.1 |
| Median read length |
366.0 |
| Median read quality |
11.2 |
| Number of reads |
40,423.0 |
| Read length N50 |
676.0 |
| STDEV read length |
406.6 |
| Total bases |
20,103,055.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
40407 (100.0%) 20.1Mb |
| >Q7 |
40089 (99.2%) 20.1Mb |
| >Q10 |
25306 (62.6%) 13.7Mb |
| >Q12 |
17186 (42.5%) 9.6Mb |
| >Q15 |
6594 (16.3%) 3.4Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
32.2 (20) |
| 2 |
32.1 (20) |
| 3 |
31.9 (20) |
| 4 |
31.8 (20) |
| 5 |
31.7 (20) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
3270 (13.5) |
| 2 |
3262 (10.0) |
| 3 |
3124 (12.0) |
| 4 |
2980 (14.1) |
| 5 |
2976 (13.2) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot