NanoPlot statistics report
NanoPlot reports
Summary statistics prior to filtering
| General summary |
|
| Mean read length |
519.5 |
| Mean read quality |
10.0 |
| Median read length |
387.0 |
| Median read quality |
10.9 |
| Number of reads |
20,413.0 |
| Read length N50 |
720.0 |
| STDEV read length |
422.3 |
| Total bases |
10,603,626.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
20398 (99.9%) 10.6Mb |
| >Q7 |
20227 (99.1%) 10.6Mb |
| >Q10 |
12052 (59.0%) 7.0Mb |
| >Q12 |
8179 (40.1%) 4.9Mb |
| >Q15 |
3223 (15.8%) 1.8Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
33.8 (20) |
| 2 |
32.9 (20) |
| 3 |
32.6 (20) |
| 4 |
32.6 (20) |
| 5 |
31.6 (20) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
4639 (7.4) |
| 2 |
3628 (8.9) |
| 3 |
3437 (13.8) |
| 4 |
3248 (12.4) |
| 5 |
3199 (14.3) |
Summary statistics after filtering
| General summary |
|
| Mean read length |
519.5 |
| Mean read quality |
10.0 |
| Median read length |
387.0 |
| Median read quality |
10.9 |
| Number of reads |
20,412.0 |
| Read length N50 |
720.0 |
| STDEV read length |
422.3 |
| Total bases |
10,603,607.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
20397 (99.9%) 10.6Mb |
| >Q7 |
20226 (99.1%) 10.6Mb |
| >Q10 |
12051 (59.0%) 7.0Mb |
| >Q12 |
8178 (40.1%) 4.9Mb |
| >Q15 |
3222 (15.8%) 1.8Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
33.8 (20) |
| 2 |
32.9 (20) |
| 3 |
32.6 (20) |
| 4 |
32.6 (20) |
| 5 |
31.6 (20) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
4639 (7.4) |
| 2 |
3628 (8.9) |
| 3 |
3437 (13.8) |
| 4 |
3248 (12.4) |
| 5 |
3199 (14.3) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot