NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
2,729.2 |
| Mean read quality |
11.8 |
| Median read length |
3,492.0 |
| Median read quality |
13.4 |
| Number of reads |
18,742.0 |
| Read length N50 |
3,507.0 |
| STDEV read length |
1,238.7 |
| Total bases |
51,151,272.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
18742 (100.0%) 51.2Mb |
| >Q7 |
18739 (100.0%) 51.2Mb |
| >Q10 |
16370 (87.3%) 46.4Mb |
| >Q12 |
13143 (70.1%) 37.9Mb |
| >Q15 |
3898 (20.8%) 11.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
23.4 (160) |
| 2 |
22.8 (212) |
| 3 |
22.7 (174) |
| 4 |
21.8 (173) |
| 5 |
21.8 (169) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
8192 (14.0) |
| 2 |
7627 (13.4) |
| 3 |
7142 (13.6) |
| 4 |
7061 (12.0) |
| 5 |
7061 (10.6) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot