NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
2,909.8 |
| Mean read quality |
12.0 |
| Median read length |
3,502.0 |
| Median read quality |
13.6 |
| Number of reads |
13,872.0 |
| Read length N50 |
3,510.0 |
| STDEV read length |
1,154.9 |
| Total bases |
40,364,416.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
13872 (100.0%) 40.4Mb |
| >Q7 |
13869 (100.0%) 40.4Mb |
| >Q10 |
12293 (88.6%) 36.9Mb |
| >Q12 |
10035 (72.3%) 30.6Mb |
| >Q15 |
3444 (24.8%) 10.5Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
24.6 (197) |
| 2 |
22.6 (151) |
| 3 |
22.2 (236) |
| 4 |
21.6 (184) |
| 5 |
21.5 (228) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
11919 (13.9) |
| 2 |
10885 (14.9) |
| 3 |
10242 (15.1) |
| 4 |
9472 (10.0) |
| 5 |
7472 (9.3) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot