NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
1,256.7 |
| Mean read quality |
12.3 |
| Median read length |
1,185.0 |
| Median read quality |
13.8 |
| Number of reads |
362,695.0 |
| Read length N50 |
1,401.0 |
| STDEV read length |
507.2 |
| Total bases |
455,816,057.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
362691 (100.0%) 455.8Mb |
| >Q7 |
362621 (100.0%) 455.8Mb |
| >Q10 |
330729 (91.2%) 416.9Mb |
| >Q12 |
275017 (75.8%) 347.3Mb |
| >Q15 |
100434 (27.7%) 123.3Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
31.4 (20) |
| 2 |
30.2 (20) |
| 3 |
29.6 (20) |
| 4 |
29.5 (48) |
| 5 |
29.5 (20) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
7563 (8.5) |
| 2 |
6329 (8.0) |
| 3 |
5635 (15.4) |
| 4 |
5280 (12.1) |
| 5 |
4550 (7.7) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot