NanoPlot statistics report
NanoPlot reports
Summary statistics prior to filtering
| General summary |
|
| Mean read length |
1,259.1 |
| Mean read quality |
12.5 |
| Median read length |
1,186.0 |
| Median read quality |
14.0 |
| Number of reads |
386,409.0 |
| Read length N50 |
1,399.0 |
| STDEV read length |
505.1 |
| Total bases |
486,533,338.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
386402 (100.0%) 486.5Mb |
| >Q7 |
386350 (100.0%) 486.5Mb |
| >Q10 |
355365 (92.0%) 448.8Mb |
| >Q12 |
300867 (77.9%) 381.0Mb |
| >Q15 |
118412 (30.6%) 146.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
33.2 (16) |
| 2 |
32.1 (20) |
| 3 |
30.9 (20) |
| 4 |
30.4 (20) |
| 5 |
30.0 (20) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
8928 (11.3) |
| 2 |
6763 (14.4) |
| 3 |
6021 (7.9) |
| 4 |
4630 (8.1) |
| 5 |
4443 (10.6) |
Summary statistics after filtering
| General summary |
|
| Mean read length |
1,259.1 |
| Mean read quality |
12.5 |
| Median read length |
1,186.0 |
| Median read quality |
14.0 |
| Number of reads |
386,408.0 |
| Read length N50 |
1,399.0 |
| STDEV read length |
505.1 |
| Total bases |
486,533,322.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
386401 (100.0%) 486.5Mb |
| >Q7 |
386349 (100.0%) 486.5Mb |
| >Q10 |
355364 (92.0%) 448.8Mb |
| >Q12 |
300866 (77.9%) 381.0Mb |
| >Q15 |
118411 (30.6%) 146.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
32.1 (20) |
| 2 |
30.9 (20) |
| 3 |
30.4 (20) |
| 4 |
30.0 (20) |
| 5 |
29.6 (20) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
8928 (11.3) |
| 2 |
6763 (14.4) |
| 3 |
6021 (7.9) |
| 4 |
4630 (8.1) |
| 5 |
4443 (10.6) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot