NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
1,026.1 |
| Mean read quality |
10.4 |
| Median read length |
349.0 |
| Median read quality |
11.7 |
| Number of reads |
4,830.0 |
| Read length N50 |
3,478.0 |
| STDEV read length |
1,494.6 |
| Total bases |
4,956,277.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
4830 (100.0%) 5.0Mb |
| >Q7 |
4820 (99.8%) 5.0Mb |
| >Q10 |
3259 (67.5%) 3.8Mb |
| >Q12 |
2294 (47.5%) 2.8Mb |
| >Q15 |
869 (18.0%) 0.9Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
24.9 (171) |
| 2 |
23.1 (172) |
| 3 |
23.1 (144) |
| 4 |
22.9 (211) |
| 5 |
22.6 (325) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
21624 (11.9) |
| 2 |
17049 (8.4) |
| 3 |
15831 (8.9) |
| 4 |
14888 (10.0) |
| 5 |
13491 (12.9) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot