NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
1,018.3 |
| Mean read quality |
10.1 |
| Median read length |
344.0 |
| Median read quality |
11.3 |
| Number of reads |
3,380.0 |
| Read length N50 |
3,473.0 |
| STDEV read length |
1,478.7 |
| Total bases |
3,441,939.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
3380 (100.0%) 3.4Mb |
| >Q7 |
3373 (99.8%) 3.4Mb |
| >Q10 |
2095 (62.0%) 2.6Mb |
| >Q12 |
1494 (44.2%) 2.0Mb |
| >Q15 |
508 (15.0%) 0.6Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
23.5 (160) |
| 2 |
22.8 (186) |
| 3 |
22.1 (138) |
| 4 |
21.5 (168) |
| 5 |
20.9 (246) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
18429 (14.8) |
| 2 |
13227 (11.6) |
| 3 |
11792 (10.5) |
| 4 |
11675 (15.5) |
| 5 |
11608 (8.9) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot