NanoPlot statistics report
NanoPlot reports
Summary statistics prior to filtering
| General summary |
|
| Mean read length |
534.5 |
| Mean read quality |
10.0 |
| Median read length |
336.0 |
| Median read quality |
10.9 |
| Number of reads |
8,321.0 |
| Read length N50 |
917.0 |
| STDEV read length |
523.0 |
| Total bases |
4,447,401.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
8319 (100.0%) 4.4Mb |
| >Q7 |
8261 (99.3%) 4.4Mb |
| >Q10 |
4964 (59.7%) 2.8Mb |
| >Q12 |
3197 (38.4%) 1.9Mb |
| >Q15 |
953 (11.5%) 0.5Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
30.9 (15) |
| 2 |
30.4 (20) |
| 3 |
30.0 (20) |
| 4 |
28.9 (20) |
| 5 |
28.9 (20) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
3343 (14.1) |
| 2 |
3322 (14.1) |
| 3 |
3231 (12.2) |
| 4 |
3192 (10.0) |
| 5 |
3175 (11.2) |
Summary statistics after filtering
| General summary |
|
| Mean read length |
534.5 |
| Mean read quality |
10.0 |
| Median read length |
336.0 |
| Median read quality |
10.9 |
| Number of reads |
8,320.0 |
| Read length N50 |
917.0 |
| STDEV read length |
523.0 |
| Total bases |
4,447,386.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
8318 (100.0%) 4.4Mb |
| >Q7 |
8260 (99.3%) 4.4Mb |
| >Q10 |
4963 (59.7%) 2.8Mb |
| >Q12 |
3196 (38.4%) 1.9Mb |
| >Q15 |
952 (11.4%) 0.5Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
30.4 (20) |
| 2 |
30.0 (20) |
| 3 |
28.9 (20) |
| 4 |
28.9 (20) |
| 5 |
28.9 (21) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
3343 (14.1) |
| 2 |
3322 (14.1) |
| 3 |
3231 (12.2) |
| 4 |
3192 (10.0) |
| 5 |
3175 (11.2) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot