NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
584.9 |
| Mean read quality |
9.8 |
| Median read length |
426.0 |
| Median read quality |
10.6 |
| Number of reads |
3,394.0 |
| Read length N50 |
1,025.0 |
| STDEV read length |
562.9 |
| Total bases |
1,985,183.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
3393 (100.0%) 2.0Mb |
| >Q7 |
3366 (99.2%) 2.0Mb |
| >Q10 |
1967 (58.0%) 1.2Mb |
| >Q12 |
1198 (35.3%) 0.8Mb |
| >Q15 |
332 (9.8%) 0.2Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
31.1 (62) |
| 2 |
29.8 (20) |
| 3 |
29.3 (16) |
| 4 |
29.3 (20) |
| 5 |
28.1 (26) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
3385 (12.0) |
| 2 |
3296 (13.5) |
| 3 |
3166 (8.4) |
| 4 |
3138 (9.1) |
| 5 |
2865 (7.9) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot