NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
1,579.2 |
| Mean read quality |
10.1 |
| Median read length |
445.0 |
| Median read quality |
11.2 |
| Number of reads |
12,498.0 |
| Read length N50 |
3,491.0 |
| STDEV read length |
1,525.2 |
| Total bases |
19,736,330.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
12498 (100.0%) 19.7Mb |
| >Q7 |
12490 (99.9%) 19.7Mb |
| >Q10 |
8181 (65.5%) 16.2Mb |
| >Q12 |
5029 (40.2%) 11.0Mb |
| >Q15 |
959 (7.7%) 1.8Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
25.0 (145) |
| 2 |
25.0 (366) |
| 3 |
23.6 (212) |
| 4 |
22.7 (126) |
| 5 |
21.9 (232) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
7066 (13.7) |
| 2 |
7031 (11.7) |
| 3 |
7027 (14.9) |
| 4 |
5675 (8.3) |
| 5 |
5660 (14.0) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot