NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
1,620.7 |
| Mean read quality |
10.3 |
| Median read length |
459.0 |
| Median read quality |
11.6 |
| Number of reads |
13,397.0 |
| Read length N50 |
3,494.0 |
| STDEV read length |
1,548.4 |
| Total bases |
21,712,238.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
13396 (100.0%) 21.7Mb |
| >Q7 |
13378 (99.9%) 21.7Mb |
| >Q10 |
8922 (66.6%) 18.2Mb |
| >Q12 |
6087 (45.4%) 13.7Mb |
| >Q15 |
1401 (10.5%) 2.7Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
29.4 (112) |
| 2 |
24.6 (135) |
| 3 |
24.2 (168) |
| 4 |
23.6 (186) |
| 5 |
23.3 (136) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
8580 (12.0) |
| 2 |
8466 (14.0) |
| 3 |
8335 (9.5) |
| 4 |
8250 (7.3) |
| 5 |
8196 (14.9) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot