NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
2,370.5 |
| Mean read quality |
11.2 |
| Median read length |
3,466.0 |
| Median read quality |
12.8 |
| Number of reads |
51,867.0 |
| Read length N50 |
3,498.0 |
| STDEV read length |
1,469.8 |
| Total bases |
122,950,476.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
51867 (100.0%) 123.0Mb |
| >Q7 |
51848 (100.0%) 122.9Mb |
| >Q10 |
42120 (81.2%) 108.4Mb |
| >Q12 |
31820 (61.3%) 85.2Mb |
| >Q15 |
6776 (13.1%) 16.5Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
25.3 (204) |
| 2 |
24.9 (162) |
| 3 |
24.3 (224) |
| 4 |
24.2 (159) |
| 5 |
23.7 (200) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
13466 (8.1) |
| 2 |
13137 (14.2) |
| 3 |
13019 (13.4) |
| 4 |
12174 (9.1) |
| 5 |
11681 (9.8) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot