NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
1,082.7 |
| Mean read quality |
12.1 |
| Median read length |
1,027.0 |
| Median read quality |
13.4 |
| Number of reads |
282,097.0 |
| Read length N50 |
1,269.0 |
| STDEV read length |
501.2 |
| Total bases |
305,421,374.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
282096 (100.0%) 305.4Mb |
| >Q7 |
282053 (100.0%) 305.4Mb |
| >Q10 |
253324 (89.8%) 275.9Mb |
| >Q12 |
201873 (71.6%) 221.5Mb |
| >Q15 |
63231 (22.4%) 67.7Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
31.6 (20) |
| 2 |
29.8 (19) |
| 3 |
29.5 (21) |
| 4 |
27.6 (20) |
| 5 |
27.4 (22) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
4343 (8.0) |
| 2 |
4113 (12.3) |
| 3 |
4112 (7.8) |
| 4 |
3888 (13.8) |
| 5 |
3802 (10.9) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot