NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
1,097.0 |
| Mean read quality |
12.2 |
| Median read length |
1,047.0 |
| Median read quality |
13.6 |
| Number of reads |
320,938.0 |
| Read length N50 |
1,288.0 |
| STDEV read length |
506.3 |
| Total bases |
352,071,304.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
320933 (100.0%) 352.1Mb |
| >Q7 |
320879 (100.0%) 352.1Mb |
| >Q10 |
289729 (90.3%) 319.8Mb |
| >Q12 |
235155 (73.3%) 261.8Mb |
| >Q15 |
80948 (25.2%) 88.6Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
29.3 (20) |
| 2 |
29.1 (20) |
| 3 |
28.9 (20) |
| 4 |
28.3 (74) |
| 5 |
28.0 (20) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
4897 (8.5) |
| 2 |
4808 (14.5) |
| 3 |
4169 (12.8) |
| 4 |
4149 (10.9) |
| 5 |
3959 (14.2) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot