NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
1,319.9 |
| Mean read quality |
10.9 |
| Median read length |
418.0 |
| Median read quality |
12.3 |
| Number of reads |
25,906.0 |
| Read length N50 |
3,494.0 |
| STDEV read length |
1,655.9 |
| Total bases |
34,192,254.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
25906 (100.0%) 34.2Mb |
| >Q7 |
25884 (99.9%) 34.2Mb |
| >Q10 |
19505 (75.3%) 29.1Mb |
| >Q12 |
14076 (54.3%) 22.0Mb |
| >Q15 |
4066 (15.7%) 5.3Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
26.4 (175) |
| 2 |
24.4 (163) |
| 3 |
23.8 (128) |
| 4 |
23.2 (142) |
| 5 |
23.1 (169) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
23765 (15.5) |
| 2 |
16822 (11.1) |
| 3 |
16231 (13.3) |
| 4 |
15942 (9.2) |
| 5 |
15664 (15.1) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot