NanoPlot statistics report
NanoPlot reports
Summary statistics prior to filtering
| General summary |
|
| Mean read length |
899.5 |
| Mean read quality |
12.3 |
| Median read length |
839.0 |
| Median read quality |
13.6 |
| Number of reads |
291,635.0 |
| Read length N50 |
1,036.0 |
| STDEV read length |
419.6 |
| Total bases |
262,331,071.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
291610 (100.0%) 262.3Mb |
| >Q7 |
291260 (99.9%) 262.3Mb |
| >Q10 |
265062 (90.9%) 240.4Mb |
| >Q12 |
217106 (74.4%) 197.8Mb |
| >Q15 |
75482 (25.9%) 65.7Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
32.3 (20) |
| 2 |
32.1 (20) |
| 3 |
32.1 (19) |
| 4 |
31.9 (20) |
| 5 |
31.7 (20) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
4949 (10.9) |
| 2 |
3869 (12.4) |
| 3 |
3852 (14.2) |
| 4 |
3771 (8.5) |
| 5 |
3400 (12.7) |
Summary statistics after filtering
| General summary |
|
| Mean read length |
899.5 |
| Mean read quality |
12.3 |
| Median read length |
839.0 |
| Median read quality |
13.6 |
| Number of reads |
291,629.0 |
| Read length N50 |
1,036.0 |
| STDEV read length |
419.6 |
| Total bases |
262,330,957.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
291604 (100.0%) 262.3Mb |
| >Q7 |
291254 (99.9%) 262.3Mb |
| >Q10 |
265056 (90.9%) 240.4Mb |
| >Q12 |
217100 (74.4%) 197.8Mb |
| >Q15 |
75476 (25.9%) 65.7Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
32.3 (20) |
| 2 |
32.1 (20) |
| 3 |
31.9 (20) |
| 4 |
31.7 (20) |
| 5 |
31.7 (20) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
4949 (10.9) |
| 2 |
3869 (12.4) |
| 3 |
3852 (14.2) |
| 4 |
3771 (8.5) |
| 5 |
3400 (12.7) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot