NanoPlot statistics report
NanoPlot reports
Summary statistics prior to filtering
| General summary |
|
| Mean read length |
904.9 |
| Mean read quality |
12.4 |
| Median read length |
844.0 |
| Median read quality |
13.8 |
| Number of reads |
295,313.0 |
| Read length N50 |
1,035.0 |
| STDEV read length |
416.5 |
| Total bases |
267,237,278.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
295298 (100.0%) 267.2Mb |
| >Q7 |
294977 (99.9%) 267.2Mb |
| >Q10 |
269690 (91.3%) 245.7Mb |
| >Q12 |
223843 (75.8%) 204.6Mb |
| >Q15 |
83351 (28.2%) 73.4Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
33.3 (17) |
| 2 |
33.1 (18) |
| 3 |
32.9 (20) |
| 4 |
32.1 (20) |
| 5 |
32.1 (21) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
17531 (8.0) |
| 2 |
4345 (7.8) |
| 3 |
3804 (8.2) |
| 4 |
3577 (8.3) |
| 5 |
3503 (11.2) |
Summary statistics after filtering
| General summary |
|
| Mean read length |
904.9 |
| Mean read quality |
12.4 |
| Median read length |
844.0 |
| Median read quality |
13.8 |
| Number of reads |
295,307.0 |
| Read length N50 |
1,035.0 |
| STDEV read length |
416.5 |
| Total bases |
267,237,169.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
295292 (100.0%) 267.2Mb |
| >Q7 |
294971 (99.9%) 267.2Mb |
| >Q10 |
269684 (91.3%) 245.7Mb |
| >Q12 |
223837 (75.8%) 204.6Mb |
| >Q15 |
83345 (28.2%) 73.4Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
32.9 (20) |
| 2 |
32.1 (20) |
| 3 |
32.1 (21) |
| 4 |
31.9 (20) |
| 5 |
31.9 (20) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
17531 (8.0) |
| 2 |
4345 (7.8) |
| 3 |
3804 (8.2) |
| 4 |
3577 (8.3) |
| 5 |
3503 (11.2) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot