NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
2,832.4 |
| Mean read quality |
11.5 |
| Median read length |
3,481.0 |
| Median read quality |
12.8 |
| Number of reads |
15,960.0 |
| Read length N50 |
3,497.0 |
| STDEV read length |
1,419.5 |
| Total bases |
45,205,123.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
15960 (100.0%) 45.2Mb |
| >Q7 |
15959 (100.0%) 45.2Mb |
| >Q10 |
13583 (85.1%) 40.1Mb |
| >Q12 |
10119 (63.4%) 30.4Mb |
| >Q15 |
2091 (13.1%) 5.9Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
24.0 (213) |
| 2 |
22.4 (291) |
| 3 |
21.0 (162) |
| 4 |
20.9 (175) |
| 5 |
20.3 (208) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
22584 (7.4) |
| 2 |
15364 (12.7) |
| 3 |
14823 (14.2) |
| 4 |
14530 (14.4) |
| 5 |
14108 (12.3) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot